Bioscience Methods 2024, Vol.15, No.3, 102-113 http://bioscipublisher.com/index.php/bm 111 Acknowledgments Author extends sincere thanks to two anonymous peer reviewers for their invaluable feedback on the manuscript. Conflict of Interest Disclosure Author affirms that this research was conducted without any commercial or financial relationships that could be construed as a potential conflict of interest. Reference Aoki W., Kogawa M., Matsuda S., Matsubara K., Hirata S., Nishikawa Y., Hosokawa M., Takeyama H., Matoh T., and Ueda M., 2022, Massively parallel single-cell genomics of microbiomes in rice paddies, Frontiers in Microbiology, 13: 11. https://doi.org/10.3389/fmicb.2022.1024640 Baddal B., 2019, Next-generation technologies for studying host-pathogen interactions: a focus on dual transcriptomics, CRISPR/Cas9 screening and organs-on-chips, Pathogens and Disease, 60: 22-26. https://doi.org/10.1093/femspd/ftz060 Chang Q., Xu H., Peng Y., and Fan J., 2019, Subtractive hybridization-assisted screening and characterization of genes involved in the rice-Magnaporthe oryzae interaction, Phytopathology Research, 1: 1-13. https://doi.org/10.1186/s42483-019-0027-5 Che F., Entani T., Marumoto T., Taniguchi M., Takayama S., and Isogai A., 2002, Identification of novel genes differentially expressed in compatible and incompatible interactions between rice and pseudomonas avenae, Plant Science, 162: 449-458. https://doi.org/10.1016/S0168-9452(01)00585-4 Chulang Y., Yong Y., Xuming W., Chengqi Y., and Jianping C., 2010, Recent advances in proteomic studies on rice-pathogen interactions, Chinese Journal of Rice Science, 24: 647-651. Costa L., 2012, From biological warfare to the brighter side of rice research, Plant & Cell Physiology, 53(4): 603-605. https://doi.org/10.1093/pcp/pcs039 Guo J., Huang Z., Sun J., Cui X., and Liu Y., 2021, Research progress and future development trends in medicinal plant transcriptomics, Frontiers in Plant Science, 12: 38. https://doi.org/10.3389/fpls.2021.691838 Haiyan H., Jieyun Z., Rongyao C., Jianli W., Yeyang F., and Kang-le Z., 2007, Identification of differentially expressed genes in rice plants responded to different races of blast fungus, Chinese Journal of Rice Science, 11:1-6. He Z., Huang X., Fan Y., Yang M., and Zhou E., 2022, Metatranscriptomic analysis reveals rich mycoviral diversity in three major fungal pathogens of rice, International Journal of Molecular Sciences, 23: 192. https://doi.org/10.3390/ijms23169192 Huang M., Balimponya E., Mgonja E., McHale L., Luzi-Kihupi A., Wang G., and Sneller C., 2019, Use of genomic selection in breeding rice (Oryza sativa L.) for resistance to rice blast (Magnaporthe oryzae), Molecular Breeding, 39: 2. https://doi.org/10.1007/s11032-019-1023-2 Jeon J., Lee G., Kim K., Park S., Kim S., Kwon S., Huh A., Chung H., Lee D., Kim C., and Lee Y., 2020, Transcriptome profiling of the rice blast fungus Magnaporthe oryzae and its host Oryza sativa during infection, Molecular Plant-microbe Interactions: MPMI, 34: 78. https://doi.org/10.1094/MPMI-07-19-0207-A Jiang N., Yan J., Liang Y., Shi Y., He Z., Wu Y., Zeng Q., Liu X., and Peng J., 2020, Resistance genes and their interactions with bacterial blight/leaf streak pathogens (Xanthomonas oryzae) in rice ( Oryza sativa L.)-an updated review, Rice, 13: 58. https://doi.org/10.1186/s12284-019-0358-y Kawahara Y., Oono Y., Kanamori H., Matsumoto T., Itoh T., and Minami E., 2012, Simultaneous RNA-Seq analysis of a mixed transcriptome of rice and blast fungus interaction, PLoS ONE, 7: 23. https://doi.org/10.1371/journal.pone.0049423 Kazan K., and Gardiner D., 2018, Transcriptomics of cereal-fusarium graminearum interactions: what we have learned so far, Molecular Plant Pathology, 19(3): 764-778. https://doi.org/10.1111/mpp.12561 Khojasteh M., Khahani B., Taghavi M., and Tavakol E., 2017, Identification and characterization of responsive genes in rice during compatible interactions with pathogenic pathovars of Xanthomonas oryzae, European Journal of Plant Pathology, 151: 141-153. https://doi.org/10.1007/s10658-017-1363-x Kim S., Ahn I., and Lee Y., 2001, Analysis of genes expressed during rice-Magnaporthe grisea interactions, Molecular Plant-microbe Interactions : MPMI, 14(11): 1340-1346. https://doi.org/10.1094/MPMI.2001.14.11.1340 Kłodawska K., Bojko M., and Latowski D., 2018, Transcriptomics of arsenic tolerance in plants, Scientific Reports, 11: 317-339. https://doi.org/10.1007/978-981-13-1292-2_14 Kumari C., Dutta T., Banakar P., and Rao U., 2016, Comparing the defence-related gene expression changes upon root-knot nematode attack in susceptible versus resistant cultivars of rice, Scientific Reports, 6: 8.
RkJQdWJsaXNoZXIy MjQ4ODY0NQ==