Page 52-53 - Triticeae Genomics and Genetics

Supplementary Table 3 Colinear syntenic blocks between wheat and brachypodium chromosomes
Block No. Wheat Brachypodium syntenic region
Chromosome arm Consensus bin Start EST End EST No. of ESTs Chromosome Start position End position Size (bp) Size (Mbp)
1 WC1-S 0.86-1.06 NSF15303 BF473448 13 Bd2 36297534 49255755 12958221 13.0
2 WC1-S 0.47-0.48 BE637864 BE403749 8 Bd2 32493283 35945824 3452541 3.5
3 WC1-L 0.18-0.32 BF474224 BF428897 7 Bd3 29574031 36431338 6857307 6.9
4 WC1-L 0.41-0.47 BG607036 BE500310 12 Bd3 30781725 36625345 5843620 5.8
5 WC1-L 0.47-0.61 BF474340 BF293581 30 Bd2 14979412 27684635 12705223 12.7
6 WC1-L 0.61-0.69 BE444620 BE499209 18 Bd2 2448510 45298917 42850407 42.9
7 WC1-L 0.85-1.00 BF474878 BM140321 11 Bd2 13023601 15685969 2662368 2.7
8 WC2-S 0.78-0.84 BG275030 BF201442 5 Bd1 13396915 15752548 2355633 2.4
9 WC2-S 0.53-0.75 BF202468 BG314234 16 Bd1 13816037 16680289 2864252 2.9
10 WC2-S 0.47-0.53 NSF15150 BG263377 10 Bd1 14017988 17757851 3739863 3.7
11 WC2-S C-0.33 BF485144 BF201328 11 Bd1 13427739 21485267 8057528 8.1
12 WC2-L 0.36-0.49 BE496834 BF201804 11 Bd5 8369967 19163722 10793755 10.8
13 WC2-L 0.49-0.50 BF483237 BG274584 32 Bd5 12434794 23285943 10851149 10.9
14 WC2-L 0.50-0.76 BF291656 BE403217 10 Bd5 20833518 24538557 3705039 3.7
15 WC2-L 0.76-0.85 BE442981 BF291966 12 Bd5 17301192 28357301 11056109 11.1
16 WC2-L 0.89-1.00 BE490763 BF292159 14 Bd5 19361948 28095107 8733159 8.7
17 WC3-S 0.78-1.00 BE404656 BE438292 3 Bd2 541562 1356887 815325 0.8
18 WC3-S 0.57-0.78 BE398279 BG604577 12 Bd2 1276924 4189560 2912636 2.9
19 WC3-S 0.45-0.55 BE404868 BE488921 9 Bd2 3561723 6723993 3162270 3.2
20 WC3-S 0.33-0.45 BF484958 BG262634 8 Bd2 6473950 9429450 2955500 3.0
21 WC3-S 0.24-0.33 BE497534 BG262910 9 Bd2 3346134 9198723 5852589 5.9
22 WC3-S C-0.23 BE499141 BF474859 5 Bd2 8089683 12198998 4109315 4.1
23 WC3-L C-0.22 BE495066 BE406566 18 Bd2 41083856 46141164 5057308 5.1
24 WC3-L 0.27-0.42 BG313297 BE495766 6 Bd2 47573521 48558615 985094 1.0
25 WC3-L 0.42-0.50 BG607861 BF202587 25 Bd2 47053242 52451057 5397815 5.4
26 WC3-L 0.50-0.63 BE445011 BE444736 14 Bd2 38181277 56794535 18613258 18.6
27 WC3-L 0.63-0.78 BE489274 BG263365 5 Bd2 53809108 56639794 2830686 2.8
28 WC3-L 0.78-0.81 BE497664 BE495175 18 Bd2 42846314 57523543 14677229 14.7
29 WC3-L 0.81-1.00 BE405221 BF485440 17 Bd2 55374316 60181631 4807315 4.8
30 WC4-S 0.82-1.00 BF482960 BE489555 6 Bd1 8032805 9813358 1780553 1.8